Use when the user needs multi source research with citation tracking, evidence persistence, and structured report generation. Triggers on "deep research", "comprehensive analysis", "research report", "compare X vs Y", "analyze trends", or "state of the art". Not for simple lookups, debugging, or questions answerable with 1 2 searches.
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npx skills add 199-biotechnologies/claude-deep-research-skill --skill deep-researchDeliver citation-tracked research reports through a structured pipeline with evidence persistence, source identity management, claim-level verification, and progressive context management.
Autonomy Principle: Operate independently. Infer assumptions from context. Only stop for critical errors or incomprehensible queries. Surface high-materiality assumptions explicitly in the Introduction and Methodology rather than silently defaulting.
Request Analysis
+-- Simple lookup? --> STOP: Use WebSearch
+-- Debugging? --> STOP: Use standard tools
+-- Complex analysis needed? --> CONTINUE
Mode Selection
+-- Initial exploration --> quick (3 phases, 2-5 min)
+-- Standard research --> standard (6 phases, 5-10 min) [DEFAULT]
+-- Critical decision --> deep (8 phases, 10-20 min)
+-- Comprehensive review --> ultradeep (8+ phases, 20-45 min)
Default assumptions: Technical query = technical audience. Comparison = balanced perspective. Trend = recent 1-2 years.
| Phase | Name | Quick | Std | Deep | Ultra |
|---|---|---|---|---|---|
| 1 | SCOPE | Y | Y | Y | Y |
| 2 | PLAN | - | Y | Y | Y |
| 3 | RETRIEVE | Y | Y | Y | Y |
| 4 | TRIANGULATE | - | Y | Y | Y |
| 4.5 | OUTLINE REFINEMENT | - | Y | Y | Y |
| 5 | SYNTHESIZE | - | Y | Y | Y |
| 6 | CRITIQUE | - | - | Y | Y |
| 7 | REFINE | - | - | Y | Y |
| 8 | PACKAGE | Y | Y | Y | Y |
Note: Phases 3-5 operate as an evidence loop per section (retrieve → evidence store → refine outline → draft → verify claims → delta-retrieve if needed), not as strict sequential gates.
On invocation, load relevant reference files:
Templates:
Scripts:
python scripts/validate_report.py --report [path]python scripts/verify_citations.py --report [path]python scripts/md_to_html.py [markdown_path]Required sections:
Output files (all to ~/Documents/[Topic]_Research_[YYYYMMDD]/):
sources.jsonl — stable source registry with canonical IDsevidence.jsonl — append-only evidence store with quotes and locatorsclaims.jsonl — atomic claim ledger with support statusrun_manifest.json — query, mode, assumptions, provider configQuality standards:
evidence.jsonlUse: Comprehensive analysis, technology comparisons, state-of-the-art reviews, multi-perspective investigation, market analysis.
Do NOT use: Simple lookups, debugging, 1-2 search answers, quick time-sensitive queries.
| Путь | Размер | SHA256 |
|---|---|---|
| README.md | 4924 | 27d8c58f22baca25... |
| SKILL.md | 4343 | 0c8e777eb13d37b4... |
| reference/continuation.md | 4602 | 0ed19331d7c7f577... |
| reference/html-generation.md | 2919 | a8ebc64d52b7cd9a... |
| reference/methodology.md | 16505 | d17cab6a258c2b5f... |
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